PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_555_iso_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 165aa    MW: 18332.3 Da    PI: 7.3634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_555_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20251355
                                AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                       y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ +l+g
  cra_locus_555_iso_7_len_896_ver_3  2 YRGVRQRP-WGKFAAEIRDP---NkKGSRVWLGTFDTAVEAAKAYDRAAFRLRG 51
                                       9*******.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-39165IPR001471AP2/ERF domain
PROSITE profilePS5103224.236159IPR001471AP2/ERF domain
CDDcd000188.65E-32260No hitNo description
SuperFamilySSF541713.4E-23261IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-33260IPR001471AP2/ERF domain
PRINTSPR003674.5E-14213IPR001471AP2/ERF domain
PfamPF008472.7E-14251IPR001471AP2/ERF domain
PRINTSPR003674.5E-144161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
XYRGVRQRPW GKFAAEIRDP NKKGSRVWLG TFDTAVEAAK AYDRAAFRLR GSKAILNFPH  60
EVGNNSLPEN ELAAANSSRK RAREVPAEME ESVVTKEVKR EEEESPLSET NKPVENKFTA  120
DGPLTPSSWT SVWDCGDGKG SIYELPLLSP LSPFSRMGSS ELMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-30262363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-30262666ATERF1
3gcc_A6e-30262666ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101098.13e-65PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ404784e-61ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A068UAZ94e-65A0A068UAZ9_COFCA; Uncharacterized protein
STRINGSolyc05g052040.1.12e-54(Solanum lycopersicum)